Repositories list

• omero-cli-externalconfig

  Public
  OMERO server external configuration plugin

  omeroomeomero-cli+ 2

  omeroomeomero-cliomero-cli-pluginomero-configuration

  Python

  •

  GNU General Public License v2.0

  •00 forks•00 stars•11 issue•22 pull requests•Updated Sep 4, 2025Sep 4, 2025

• .github

  Public
  Community health files for the @microscopepony organization

  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 13, 2022Jan 13, 2022

• bio-formats-tools

  Public archive
  **Experimental** Bio-Formats command line tools

  Java

  •

  GNU General Public License v2.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jan 11, 2022Jan 11, 2022

• bio-formats-bundles

  Public archive
  **Experimental** Distribution bundles for bio-formats releases

  bio-formats

  bio-formats

  Shell

  •

  GNU General Public License v2.0

  •44 forks•00 stars•11 issue•00 pull requests•Updated Jan 11, 2022Jan 11, 2022

• bio-formats-imagej

  Public archive
  **Experimental** Bio-Formats ImageJ plugin for image import and export

  bio-formats

  bio-formats

  Java

  •

  GNU General Public License v2.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jan 11, 2022Jan 11, 2022

• bio-formats-test

  Public archive
  **Experimental** Bio-Formats integration tests

  bio-formats

  bio-formats

  Java

  •

  GNU General Public License v2.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jan 11, 2022Jan 11, 2022

• bio-formats-matlab

  Public archive
  **Experimental** Bio-Formats Matlab and GNU Octave bindings

  MATLAB

  •

  GNU General Public License v2.0

  •66 forks•22 stars•00 issues•11 pull request•Updated Jan 11, 2022Jan 11, 2022

• staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.9k5.9k forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2021Apr 28, 2021

• idr0015-tara-oceans-geospatial

  Public
  This notebook shows how to plot geospatial metadata attached to the samples gathered by the Tara Oceans project.

  notebookgeospatialjupyter-notebook+ 3

  notebookgeospatialjupyter-notebookomeroidrome

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• idr0083-sars-cov2-notebook

  Public
  An example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr

  jupyterjupyter-notebookomero+ 3

  jupyterjupyter-notebookomeroidromesars-cov-2

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•11 star•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• idr-montage

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• idr-release-stats

  Public
  Plot IDR release stats

  notebookjupyter-notebookomero+ 2

  notebookjupyter-notebookomeroidrome

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• idr-count-publications

  Public
  Which journals are most published in the IDR?

  notebookjupyter-notebookomero+ 3

  notebookjupyter-notebookomeromybinderidrome

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• omero-mapr-graphql

  Public
  Query OMERO.mapr IDR metadata using GraphQL

  graphqlomeroopenmicroscopy+ 1

  graphqlomeroopenmicroscopymapr

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 17, 2021Jan 17, 2021

• omero-oauth

  Public
  OMERO.web application to allow OAuth2 login to OMERO

  oauth2omeroome+ 3

  oauth2omeroomeopenmicroscopyomero-webomero-web-app

  Python

  •

  GNU Affero General Public License v3.0

  •44 forks•00 stars•22 issues•00 pull requests•Updated Nov 10, 2020Nov 10, 2020

• idr-upload-js-s3-explorer

  Public
  AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web …

  HTML

  •

  Apache License 2.0

  •286286 forks•00 stars•00 issues•00 pull requests•Updated Aug 18, 2020Aug 18, 2020

• omero-server-setup

  Public
  Create, initialise and upgrade OMERO databases

  omeroomeomero-server+ 3

  omeroomeomero-serveromero-cliomero-cli-pluginomero-configuration

  PLpgSQL

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2020Jun 5, 2020

• omero-cli-database

  Public
  OMERO server database management plugin

  PLpgSQL

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 4, 2020Jun 4, 2020

• conda-omero-server

  Public
  A Conda package for OMERO.server.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2020Apr 30, 2020

• omero-asyncio

  Public
  Python asyncio OMERO client

  pythonasyncioomero+ 2

  pythonasyncioomeroomero-asyncioomero-py

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 7, 2020Mar 7, 2020

• conda-omero-server-setup

  Public
  OMERO.server setup and database management Conda package

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 3, 2020Feb 3, 2020

• conda-omero-dropbox

  Public
  A Conda package for OMERO.dropbox

  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 21, 2020Jan 21, 2020

• conda-zeroc-ice36

  Public
  zeroc-ice Conda package for OMERO

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2020Jan 20, 2020

• conda-omero-web

  Public
  OMERO.web Conda package

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2020Jan 19, 2020

• conda-whitenoise

  Public
  A conda-smithy repository for whitenoise.

  BSD 3-Clause "New" or "Revised" License

  •66 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2020Jan 19, 2020

• conda-django-pipeline

  Public
  A Conda package for django-pipeline for use with OMERO.web

  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 18, 2020Jan 18, 2020

• conda-omero-marshal

  Public
  A Conda package for OMERO.marshal.

  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 17, 2020Jan 17, 2020

• fs-omero-pyfs

  Public
  OMERO PyFilesystem2 implementation

  pythonfsomero+ 3

  pythonfsomeropyfilesystem2pyfilesystemfilesys

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 10, 2020Jan 10, 2020

• jupyter-omero-authenticator

  Public
  Use OMERO to authenticate with JupyterHub

  jupyterjupyterhubomero+ 3

  jupyterjupyterhubomerojupyterhub-authenticatoromeopenmicroscopy

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 10, 2020Jan 10, 2020

• conda-zeroc-ice-bin

  Public
  Zeroc Ice conda package with binaries and jars for OMERO

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 18, 2019Nov 18, 2019