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    46 repositories

    • racq4

      Public
      Analysis of acq4 data in R
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 11, 2025Feb 11, 2025

    • BridgingRegistrations

      Public
      Bridging registrations to convert between different Drosophila template brains
      4•7•3•0•Updated Dec 10, 2024Dec 10, 2024

    • DrosophilidDBM

      Public
      R code for Deformation Based Morphometry across Drosophilid species
      R
      •0•1•0•0•Updated Dec 2, 2024Dec 2, 2024

    • RANN

      Public
      R package providing fast nearest neighbour search (wraps ANN library)
      rnearest-neighborsr-package
      rnearest-neighborsr-packagenearest-neighboursann-library
      R
      •12•62•4•0•Updated Aug 25, 2024Aug 25, 2024

    • STAR

      Public
      Keeping https://github.com/cran/STAR alive
      R
      •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • MicroManagerStrobePlugin

      Public
      A plugin developed for MicroManager / ImageJ to coordinate pulsed LED illumination with image acquisition
      Java
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • catnat

      Public
      neuroanatomy toolbox – CATMAID extension functions
      R
      •2•1•5•0•Updated Aug 31, 2023Aug 31, 2023

    • ImageJMacros

      Public
      General Jefferis Lab ImageJ macros – e.g. split lsms
      ImageJ Macro
      •2•1•0•0•Updated Jul 1, 2023Jul 1, 2023

    • skeleton-to-MIP

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • 2023_cVA_Taisz_Galili

      Public
      Public code for Taisz, Galili et al. (2023)
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • flybrainenv

      Public
      Shared login scripts and other configuration info for the lmb linux cluster
      Shell
      •0•0•1•0•Updated Sep 21, 2022Sep 21, 2022

    • NBLAST_on-the-fly

      Public
      Web application demonstrating NBLAST neuron similarity/search
      R
      •3•5•7•0•Updated Feb 8, 2022Feb 8, 2022

    • flywatch

      Public
      Code to analyse movies of flies – principally based on Yoshi Aso's (Janelia) behaviour rig
      rdrosophila-behaviourvideo-tracking
      rdrosophila-behaviourvideo-tracking
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 27, 2021Jul 27, 2021

    • jlabvisuals

      Public
      A repo for visual materials used in lab papers, presentations and posters
      GNU General Public License v3.0
      •1•2•0•0•Updated Jun 26, 2021Jun 26, 2021

    • MakeAverageBrain

      Public
      Make average template brains using CMTK’s avg_adm tool
      Shell
      •3•6•1•0•Updated Jan 11, 2021Jan 11, 2021

    • jimpipeline

      Public
      rfijiimage-registration
      rfijiimage-registration
      R
      •0•0•0•0•Updated Sep 11, 2020Sep 11, 2020

    • lhns

      Public
      A repository for neuron data related to the fly lateral horn
      R
      •
      GNU General Public License v3.0
      •2•2•3•0•Updated Aug 20, 2020Aug 20, 2020

    • bridging_on-the-fly

      Public
      R
      •0•0•8•0•Updated May 13, 2020May 13, 2020

    • flycircuitreg

      Public
      HTML
      •0•0•0•0•Updated Nov 14, 2019Nov 14, 2019

    • MirrorRegistrations

      Public
      Mirroring points in various Drosophila melanogaster template brain spaces
      Shell
      •1•1•1•0•Updated Nov 3, 2019Nov 3, 2019

    • bftools

      Public
      Batchfile
      •0•0•0•0•Updated Nov 3, 2019Nov 3, 2019

    • nblastwwwjb

      Public
      Jekyll bootstrap version of nblast website
      Ruby
      •0•0•0•0•Updated Jul 13, 2019Jul 13, 2019

    • LHlibrary

      Public
      A R Shiny app for sharing and viewing lateral horn data
      rshinyneuroanatomy
      rshinyneuroanatomyneuroanatomy-toolbox
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated May 31, 2019May 31, 2019

    • physplitdata

      Public
      shahar's versioned raw data and db dump
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 31, 2019May 31, 2019

    • physplit.analysis

      Public
      Packaged and versioned Analysis functions for Shahar's cells
      relectrophysiologydrosophila-melanogaster
      relectrophysiologydrosophila-melanogaster
      R
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated May 31, 2019May 31, 2019

    • 2018lhsplitcode

      Public
      Analysis code for 2018 split paper
      R
      •
      MIT License
      •1•1•3•0•Updated Apr 29, 2019Apr 29, 2019

    • drvid

      Public
      Access to DVID API
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 4, 2019Apr 4, 2019

    • lhnsold

      Public
      Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster
      R
      •0•0•1•0•Updated Mar 20, 2018Mar 20, 2018

    • DrosophilidBridgingRegistrations

      Public
      Bridging registrations to convert between different Drosophila species template brains
      2•1•0•0•Updated Feb 5, 2018Feb 5, 2018

    • V2LH-R

      Public
      Some analysis associated with studies of MB-V2a neurons
      R
      •0•0•0•0•Updated Sep 8, 2017Sep 8, 2017
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