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    44 repositories

    • higlass

      Public
      Fast, flexible and extensible genome browser.
      visualizationgenomicshi-c
      visualizationgenomicshi-chiglasshidivelab
      JavaScript
      •
      MIT License
      •54•340•24•20•Updated Apr 21, 2026Apr 21, 2026

    • higlass-pileup

      Public
      JavaScript
      •
      MIT License
      •3•16•0•15•Updated Apr 21, 2026Apr 21, 2026

    • negspy

      Public
      Python NGS Repository
      Python
      •
      MIT License
      •14•9•2•2•Updated Apr 20, 2026Apr 20, 2026

    • higlass-python

      Public
      Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
      pythonjupyter-notebook-extensionjupyter-lab-extension
      pythonjupyter-notebook-extensionjupyter-lab-extensionhidivelab
      Python
      •
      MIT License
      •11•64•14•5•Updated Apr 20, 2026Apr 20, 2026

    • clodius

      Public
      Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
      hi-chiglasshidivelab
      hi-chiglasshidivelab
      Python
      •
      MIT License
      •22•39•36•6•Updated Apr 20, 2026Apr 20, 2026

    • higlass-labelled-points-track

      Public
      JavaScript
      •
      MIT License
      •0•1•0•6•Updated Feb 16, 2026Feb 16, 2026

    • higlass-vcf

      Public
      JavaScript
      •
      MIT License
      •0•3•0•13•Updated Feb 13, 2026Feb 13, 2026

    • higlass-transcripts

      Public
      Gene transcripts track for HiGlass
      JavaScript
      •
      MIT License
      •2•6•4•1•Updated Jan 20, 2026Jan 20, 2026

    • higlass-multivec

      Public
      Multivec Tracks for Higlass
      visualizationhiglasshidivelab
      visualizationhiglasshidivelab
      JavaScript
      •
      MIT License
      •6•8•14•17•Updated Oct 21, 2025Oct 21, 2025

    • simple-httpfs

      Public
      Python
      •
      MIT License
      •14•37•4•9•Updated Aug 24, 2025Aug 24, 2025

    • higlass-zarr-datafetchers

      Public
      Plugin data fetchers for HiGlass, supporting visualization of Zarr-based files located in object storage systems
      hidivelab
      hidivelab
      JavaScript
      •2•4•0•0•Updated Jul 14, 2025Jul 14, 2025

    • higlass-test-mocks

      Public
      Roff
      •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • higlass-text

      Public
      Display text in HiGlass
      JavaScript
      •
      MIT License
      •2•1•0•0•Updated Mar 1, 2025Mar 1, 2025

    • higlass-bigwig-datafetcher

      Public
      hidivelab
      hidivelab
      JavaScript
      •
      MIT License
      •2•3•0•0•Updated Jan 31, 2025Jan 31, 2025

    • higlass-sequence

      Public
      Nucleotide sequence track for HiGlass
      JavaScript
      •
      MIT License
      •3•6•2•2•Updated Jan 10, 2025Jan 10, 2025

    • higlass-schema

      Public
      Pydantic models for HiGlass
      Python
      •
      MIT License
      •1•1•0•1•Updated Dec 20, 2024Dec 20, 2024

    • higlass-widget

      Public archive
      A standalone Jupyter Widget for HiGlass
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 28, 2024Feb 28, 2024

    • gene_annotations

      Public
      Python
      •1•6•3•0•Updated Feb 22, 2024Feb 22, 2024

    • higlass-app

      Public
      A fully featured application around HiGlass for viewing, exploring, and annotating 1D and 2D genomic data
      JavaScript
      •
      MIT License
      •4•7•5•6•Updated Sep 21, 2023Sep 21, 2023

    • higlass-manage

      Public
      A utility script to manage local docker instances of HiGlass
      higlasshidivelab
      higlasshidivelab
      Python
      •
      MIT License
      •9•24•45•5•Updated Jul 6, 2023Jul 6, 2023

    • higlass-gnomad

      Public
      Display gnomAD data in HiGlass
      JavaScript
      •
      MIT License
      •0•2•1•0•Updated Jun 8, 2023Jun 8, 2023

    • higlass-server

      Public
      Server component for HiGlass that manages and serves tiled data
      hi-chiglasshidivelab
      hi-chiglasshidivelab
      Python
      •
      MIT License
      •22•21•44•13•Updated May 23, 2023May 23, 2023

    • higlass-register

      Public
      Helper tool to register pluggable tracks
      JavaScript
      •
      MIT License
      •1•1•0•9•Updated Apr 24, 2023Apr 24, 2023

    • range-track

      Public
      A plugin track for displaying ranges in HiGlass
      rangehiglasswhisker
      rangehiglasswhisker
      JavaScript
      •
      MIT License
      •0•2•0•25•Updated Jan 3, 2023Jan 3, 2023

    • higlass-arcs

      Public
      HiGlass track for displaying arcs between disconnected regions
      higlassarcsarcs-track
      higlassarcsarcs-track
      JavaScript
      •
      MIT License
      •0•10•0•16•Updated Dec 13, 2022Dec 13, 2022

    • higlass-orthologs

      Public
      JavaScript
      •
      MIT License
      •0•4•0•0•Updated Dec 8, 2022Dec 8, 2022

    • higlass-clinvar

      Public
      Display ClinVar data in HiGlass
      JavaScript
      •
      MIT License
      •0•2•0•0•Updated Dec 8, 2022Dec 8, 2022

    • higlass-docker

      Public
      Builds a docker container wrapping higlass-server and higlass-client in nginx
      hi-chiglasshidivelab
      hi-chiglasshidivelab
      Shell
      •
      MIT License
      •16•33•50•0•Updated May 31, 2022May 31, 2022

    • higlass-barbell

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated May 21, 2022May 21, 2022

    • higlass-plugins

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Nov 1, 2021Nov 1, 2021
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