Repositories list

• whole_mouse_brain_taxonomy

  Public
  Atlas of whole mouse brain

  HTML

  •00 forks•00 stars•99 issues•11 pull request•Updated Apr 22, 2026Apr 22, 2026

• basal_ganglia_consensus_taxonomy

  Public
  HMBA basal ganglia consensus taxonomy

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• harmonized_ontology_of_mammalian_brain_anatomy_ontology

  Public
  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• metadata-schemas

  Public
  A repository for BICAN metadata schemas and their development.

  metadataschemadata-management

  metadataschemadata-management

  33 forks•55 stars•1010 issues•22 pull requests•Updated Apr 12, 2026Apr 12, 2026

• models

  Public
  BICAN data models

  Python

  •66 forks•33 stars•1414 issues•44 pull requests•Updated Feb 4, 2026Feb 4, 2026

• bkbit

  Public
  Brain Knowledge Interaction Toolkit

  Python

  •

  Apache License 2.0

  •66 forks•11 star•1111 issues•33 pull requests•Updated Feb 3, 2026Feb 3, 2026

• developing_human_brain_atlas_ontology

  Public
  An application ontology built by combining ontologised versions of the Allen Institute Developing Human Brain Atlas (DHBA) StructureGraph mapped to Uberon.

  Makefile

  •00 forks•22 stars•22 issues•22 pull requests•Updated Nov 13, 2025Nov 13, 2025

• mouse_brain_atlas_ontology

  Public
  An application ontology built by combining ontologised versions of the Allen Institute Mouse Brain Atlas (MBA) StructureGraph mapped to Uberon.

  Makefile

  •00 forks•00 stars•55 issues•00 pull requests•Updated Oct 29, 2025Oct 29, 2025

• purl.brain-bican.org

  Public
  A system for managing BICAN PURLs

  Python

  •

  MIT License

  •44 forks•00 stars•22 issues•22 pull requests•Updated Jul 4, 2025Jul 4, 2025

• taxonomy-development-tools-actions

  Public
  Taxonomy Development Tools utility operations.

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•11 pull request•Updated Jun 30, 2025Jun 30, 2025

• bican_application_ontology

  Public
  Application ontology for BRAIN Initiative Cell Atlas Network (BICAN)

  owlontologyopen-science

  owlontologyopen-science

  Makefile

  •00 forks•00 stars•22 issues•00 pull requests•Updated May 30, 2025May 30, 2025

• human-neocortex-middle-temporal-gyrus

  Public
  Cellular and molecular characterization of human cortical cytoarchitecture. Dissection: Middle temporal gyrus.Facilitated by Taxonomy Development Tools.

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2025May 19, 2025

• human-brain-cell-atlas_v1_non-neuronal

  Public
  Human Brain Cell Atlas Taxonomy v1.0 (Non-neuronal) (CS202210140), facilitated by Taxonomy Development Tools.

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2025May 19, 2025

• human-brain-cell-atlas_v1_neurons

  Public
  Human Brain Cell Atlas v1.0 Taxonomy (Neurons) (CS202210140), facilitated by Taxonomy Development Tools.

  HTML

  •11 fork•00 stars•11 issue•00 pull requests•Updated May 19, 2025May 19, 2025

• basal_ganglia_macaque_taxonomy

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2025May 19, 2025

• basal_ganglia_human_taxonomy

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2025May 19, 2025

• taxonomy-development-tools

  Public
  Tools to build and edit Cell Annotation Schema taxonomies.

  Python

  •

  Apache License 2.0

  •11 fork•33 stars•3939 issues•00 pull requests•Updated May 19, 2025May 19, 2025

• developing_mouse_brain_atlas_ontology

  Public
  An application ontology built by combining ontologised versions of the Allen Institute Developing Mouse Brain Atlas (DMBA) StructureGraph mapped to Uberon.

  Makefile

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 10, 2025Feb 10, 2025

• human_brain_atlas_ontology

  Public
  An application ontology built by combining ontologised versions of the Allen Institute Human Brain Atlas (HBA) StructureGraph mapped to Uberon.

  Makefile

  •00 forks•11 star•22 issues•00 pull requests•Updated Feb 10, 2025Feb 10, 2025

• BICAN_bmark

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 4, 2025Feb 4, 2025

• scao

  Public
  Spinal Cord Atlas Ontology

  Makefile

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 25, 2024Oct 25, 2024

• knowledgegraph-jsonld-files

  Public
  some default

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 17, 2024Jul 17, 2024

• kbhub

  Public
  Infrastructure and code for the knowledgebase jupyterhub

  Jinja

  •

  Other

  •2525 forks•00 stars•00 issues•00 pull requests•Updated Jun 4, 2024Jun 4, 2024

• techniques_ontology

  Public
  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 4, 2024Jun 4, 2024

• primate_brain_atlas_ontology

  Public
  An application ontology built by combining ontologised versions of the Allen Institute Primate Brain Atlas (PBA) StructureGraph mapped to Uberon.

  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2024Apr 30, 2024

• design-documents

  Public
  11 fork•00 stars•00 issues•22 pull requests•Updated Mar 13, 2024Mar 13, 2024

• tdt-cellxgene-crawler

  Public
  Generates taxonomy repositories for Taxonomy Development Tools based on datasets published via CellXGene.

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2024Mar 11, 2024

• ansrs-schema

  Public
  LinkML schema/data model for ANSRS

  Python

  •

  MIT License

  •11 fork•11 star•11 issue•00 pull requests•Updated Feb 7, 2024Feb 7, 2024

• Metadata-Huddle-2023

  Public
  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Jan 31, 2024Jan 31, 2024

• CCN2

  Public archive
  Developing a successor to the CCN taxonomy system

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 2, 2024Jan 2, 2024