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    192 repositories

    • Harmonized_NLST_dataset

      Public
      Repository for spatial resampling, kernel harmonization and semantic field of view extension for the National Lung Screening Trial dataset
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • MAGCE_WMBrainChart

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • FLAIR_Tract

      Public
      FLAIR Tractography without subject-specific anatomical context.
      Python
      •0•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • brainstemseg_singularity

      Public
      Python
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • SATLossCustom

      Public
      modified SATLoss to fit for eye CT
      Python
      •
      MIT License
      •3•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • centerline2atlas

      Public
      Centerline-guided mesh registration tools for mapping deformed ex vivo organ surfaces to 3D anatomical atlases while preserving local geometry.
      Python
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • AtlasToDiffusionReg

      Public
      singularity to register an atlas to the diffusion space of a subject
      Jupyter Notebook
      •0•2•1•0•Updated Mar 25, 2026Mar 25, 2026

    • gsplat

      Public
      CUDA accelerated rasterization of gaussian splatting
      Python
      •
      Apache License 2.0
      •790•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • Jshi-topoloss-nnunet

      Public
      custom unet with topo loss trainer, experiments?
      Python
      •
      Apache License 2.0
      •2.4k•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • xnat-staging-pipeline

      Public
      Manifest-driven pipeline to stage symlink-heavy DICOM trees into Subject/Session/Series structure, optionally zip sessions per subject, sync reliably with resum…
      0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • insertion_network

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • PreQual

      Public
      An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
      qualitymriassurance
      qualitymriassurancepreprocessingdiffusion
      Python
      •
      Other
      •10•53•2•2•Updated Feb 11, 2026Feb 11, 2026

    • surface_distance

      Public
      Code for calculating mean absolute surface distance.
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • Informatics_ADSP

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • spherical_deep_fixel

      Public
      DeepFixel: Deep learning-based identification of crossing fiber bundle elements
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • SPIE2026_DermIDS

      Public
      Shell
      •0•1•0•0•Updated Feb 6, 2026Feb 6, 2026

    • ADSP_AutoQA

      Public
      Automated QA for ADSP processing
      Python
      •
      MIT License
      •2•5•2•1•Updated Jan 21, 2026Jan 21, 2026

    • DisCo_ext

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • BRAID

      Public
      BRain Age Identification from Diffusion MRI (BRAID)
      computer-visiondeep-learningmri
      computer-visiondeep-learningmri
      Python
      •
      Other
      •2•4•0•0•Updated Dec 12, 2025Dec 12, 2025

    • Weather_Fetcher

      Public
      Python
      •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • nf-neuro-fitbir

      Public
      Roff
      •8•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • mri2avatar

      Public
      Can we turn whole-head MRIs to photorealistic avatars?
      Python
      •
      MIT License
      •0•3•0•0•Updated Oct 10, 2025Oct 10, 2025

    • open_dive

      Public
      Open Diffusion Visualization for Everyone - BrainHack Vandy 2025
      Python
      •
      MIT License
      •8•9•5•1•Updated Aug 20, 2025Aug 20, 2025

    • cornn_tractography

      Public
      Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
      deep-learningdiffusion-mritractography
      deep-learningdiffusion-mritractographyt1-weighted-mriconvolutional-recurrent-neural-network
      Python
      •2•21•0•0•Updated Aug 6, 2025Aug 6, 2025

    • SynBOLD-DisCo

      Public
      Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
      deep-learningdistortion-correctionfmri
      deep-learningdistortion-correctionfmribold
      Python
      •
      MIT License
      •8•33•1•0•Updated Jul 31, 2025Jul 31, 2025

    • Synb0-DISCO

      Public
      Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
      deep-learningdistortion-correctiondiffusion-mri
      deep-learningdistortion-correctiondiffusion-mri
      Python
      •
      MIT License
      •33•88•2•1•Updated Jul 31, 2025Jul 31, 2025

    • deep_fixel

      Public
      DeepFixel: Deep learning-based identification of crossing fiber bundle elements
      Python
      •
      MIT License
      •2•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • slantticv_qc

      Public
      Statistical test methods for SLANT-TICV
      mribids-formatmri-segmentation
      mribids-formatmri-segmentationt1-weighted-mri
      Python
      •1•0•0•0•Updated Jul 26, 2025Jul 26, 2025

    • brain_ventricle_icu

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • beyond_fa_3r

      Public
      Shell
      •
      MIT License
      •1•0•0•0•Updated Jul 1, 2025Jul 1, 2025
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