Search results

src/toil/test/utils/toilDebugTest.py::TestDebugJob::test_retrieve_task_directory is flaky and can fail when a container cannot be created

Status: Open.

#5490 In DataBiosphere/toil;

· adamnovak opened on Apr 13, 2026

Update the Toil web site to avoid an externally managed environment error on install

intern

Status: Open.

#5488 In DataBiosphere/toil;

· unito-bot opened on Apr 10, 2026

Toil should add a pipx install bin to its own PATH

intern

Status: Open.

#5487 In DataBiosphere/toil;

· unito-bot opened on Apr 10, 2026

How many CPUs are required to run the tests?

Status: Open.

#5482 In DataBiosphere/toil;

· sanvila opened on Mar 31, 2026

CPU usage warnings are too sensitive/noisy

Status: Open.

#5478 In DataBiosphere/toil;

· adamnovak opened on Mar 25, 2026

Inject CPU monitoring code into CWL Docker containers

Status: Open.

#5477 In DataBiosphere/toil;

· adamnovak opened on Mar 24, 2026

make test can't run doctests because it captures output, but tries anyway

Status: Open.

#5474 In DataBiosphere/toil;

· adamnovak opened on Mar 18, 2026

[Question]: Warning: invalid field 'streamable'

Status: Open.

#5472 In DataBiosphere/toil;

· xdxxxdx opened on Mar 10, 2026

Toil should enable SSE-C encryption in AWS when needed

Status: Open.

#5463 In DataBiosphere/toil;

· adamnovak opened on Feb 25, 2026

Slurm batch system can submit jobs multiple times if sbatch manages to get the job in but fails

Status: Open.

#5459 In DataBiosphere/toil;

· adamnovak opened on Feb 17, 2026

Promise return value files can end up empty, with the job that is meant to fulfil them complete

Status: Open.

#5456 In DataBiosphere/toil;

· adamnovak opened on Feb 12, 2026

Look into using strigger to reduce Slurm database load

Status: Open.

#5453 In DataBiosphere/toil;

· adamnovak opened on Feb 10, 2026