RcppML/.Rbuildignore at main · zdebruine/RcppML · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
^.*\.Rproj$
^\.Rproj\.user$
^_pkgdown\.yml$
^docs$
^pkgdown$
^\.github$
^LICENSE\.md$
^news\.md$
^manuscript$
^validate_loss_computation\.R$
^src/gpu_bridge\.cu$
^src/gpu_bridge_cluster\.cu$
^src/gpu_bridge_nmf\.cu$
^src/gpu_bridge_svd\.cu$
^src/gpu_bridge_utils\.cu$
^src/gpu_bridge_common\.cuh$
^src/sp_gpu_bridge\.cu$
^src/Makefile\.gpu$
^benchmarks$
^sparsepress$
^dcgm-gpu-stats.*$
^\.venv$
^inst/lib/.*\.so$
^test_output\.txt$
^ARCHITECTURE_PROPOSALS\.md$
^RcppML\.Rcheck$
^DEVELOPMENT_PROPOSAL\.md$
^slurm-.*\.out$
^rank_selection_.*$
^NEW_ALGORITHM_PROPOSALS\.md$
^PRODUCTION_STATUS\.md$
^CLEANUP_FILE_TREE\.md$
^CLEANUP_GUIDE\.md$
^CLEANUP_PROPOSAL\.md$
^CONTRIBUTING\.md$
^BENCHMARK_STRATEGY\.md$
^tools$
^CRAN_AUDIT\.md$
^tests/cran_comparison$
^tests/.*\.sbatch$
^tests/.*\.sh$
^tests/test_unified_compile\.cpp$
^tests/logs$
^vignettes/.*\.html$
^vignettes/.*_files$
^vignettes/specs$
^inst/extdata$
^inst/lib$
^data/hcabm40k_mat\.rda$
^PRODUCTION_AUDIT\.md$
^logs$
^build_config$
^src/RcppML.*\.so$
^GITHUB_ISSUES_ANALYSIS\.md$
^GPU_RHS_OPTIMIZATION_LOG\.md$
^GPU_SVD_BOTTLENECK_ANALYSIS\.md$
^GPU_SVD_OPTIMIZATION_STATUS\.md$
^KSPR_OPTIMIZATIONS\.md$
^OPTIMIZATION_REPORT\.md$
^PRODUCTION_HARDENING\.md$
^REFACTOR_PROPOSAL\.md$
^RESTRUCTURE_PLAN\.md$
^ROOT_CAUSE_ANALYSIS\.md$
^build_.*\.sbatch$
^test_.*\.sbatch$
^src/do_build\.sh$
# Vignettes re-included March 2026 — both use eval=NOT_CRAN for CRAN safety
# ^vignettes/sparsepress\.Rmd$
# ^vignettes/nmf-deep-dive\.Rmd$
# Vignettes directory included — individual HTML/files still excluded
# ^vignettes$
^src/.*\.o$
^src/.*\.so$
^GPMF_PROPOSAL\.md$
^experiments$
^HARDENING_PLAN\.md$
^test_init_fix_.*\.out$
^tests/cpp$
^inst/include/.*\.md$
^.*\.sbatch$
^docs/dev$
^WORKQUEUE.*\.md$
^WORKSTREAMS\.md$
^\.vscode$
^test_results\.log$
^test_run\.log$
^data/geo_sketch\.rda$
^vignettes/geo-sketch-multimodal\.Rmd$
^FACTOR_NET_VIGNETTE_PLAN\.md$
^cran-comments\.md$
^vignettes/figure$
^GUIDE_EMBEDDING_NOTES\.md$
^VIGNETTE_UNADDRESSED_CRITIQUES\.md$
^sandbox$
^rendered_vignettes$
^doc$
^GuidedNMFManuscript$
^NEWS\.md\.bak$
^README\.md$
^vignettes/.*\.bak$