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    48 repositories

    • asmlab.org

      Public
      Meyer lab website
      jekylllaboratorygithub-pages
      jekylllaboratorygithub-pageswebsiteacademic
      HTML
      •1•2•11•0•Updated Apr 21, 2026Apr 21, 2026

    • brier

      Public
      Package for analyzing models according to the Brier score.
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • BAL-Pf2

      Public
      Pf2 analysis of BAL samples
      Python
      •0•0•1•1•Updated Apr 15, 2026Apr 15, 2026

    • cellcommunication-Pf2

      Public
      Python
      •
      MIT License
      •0•0•0•4•Updated Apr 13, 2026Apr 13, 2026

    • AXLomics

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Apr 13, 2026Apr 13, 2026

    • Pf2-scRNAseq

      Public
      tensorsrisescrnaseq
      tensorsrisescrnaseqparafac2
      Jupyter Notebook
      •
      MIT License
      •0•1•3•2•Updated Mar 6, 2026Mar 6, 2026

    • bi-cytok

      Public
      Modeling bispecific cytokine fusions.
      Python
      •
      MIT License
      •1•1•1•0•Updated Feb 14, 2026Feb 14, 2026

    • tensorpack

      Public
      A collection of tensor methods from the Meyer lab.
      Python
      •
      MIT License
      •2•4•1•3•Updated Feb 11, 2026Feb 11, 2026

    • DDMC

      Public
      Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
      canceracademic-projectphosphoproteomics
      canceracademic-projectphosphoproteomicsdrug-resistance
      Python
      •1•1•0•4•Updated Feb 11, 2026Feb 11, 2026

    • RISE

      Public
      PARAFAC2 for modeling multi-sample single-cell RNAseq.
      factorizationtensorstensorly
      factorizationtensorstensorlyparafac
      Jupyter Notebook
      •
      MIT License
      •0•4•1•0•Updated Dec 12, 2025Dec 12, 2025

    • sparsim-py

      Public
      Python
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • tensorly

      Public
      TensorLy: Tensor Learning in Python.
      Python
      •
      Other
      •301•0•0•1•Updated Nov 20, 2025Nov 20, 2025

    • tensordata

      Public
      A common repository for tensor structured datasets.
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 18, 2025Nov 18, 2025

    • valentBind

      Public
      The multivalent binding model implemented in Python.
      Python
      •
      MIT License
      •1•1•0•0•Updated Oct 31, 2025Oct 31, 2025

    • fit-framework

      Public
      Framework for fitting least squares problem involving variable parameters that may be shared across multiple samples.
      Python
      •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • parafac2

      Public
      A scalable implementation of PARAFAC2 with line search.
      tensorstensorlyparafac2
      tensorstensorlyparafac2
      Python
      •
      MIT License
      •1•3•1•0•Updated Oct 17, 2025Oct 17, 2025

    • liver-iri

      Public
      Explore orthotopic liver transplantation data
      Python
      •0•0•0•0•Updated May 15, 2025May 15, 2025

    • tfac-mrsa

      Public archive
      A multi-omic view of MRSA infection using tensor factorization
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • mechanismSerology

      Public archive
      Inferring antibody species from systems serology with a mechanistic binding model.
      Python
      •0•0•0•0•Updated Apr 13, 2025Apr 13, 2025

    • cell-selective-ligands

      Public archive
      A modeling perspective on cell selective ligands
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 13, 2025Apr 13, 2025

    • tfac-CoH

      Public archive
      Decoding cytokine signaling networks in cancer patients
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • cmtf-pls

      Public
      A Partial Least Squares (PLS) implementation in CMTF.
      Python
      •
      MIT License
      •0•0•1•1•Updated Feb 22, 2025Feb 22, 2025

    • tensor_review

      Public archive
      The structure is the message: preserving experimental context through tensor decomposition
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 12, 2024Jul 12, 2024

    • FcRn-trafficking

      Public archive
      Trafficking model of FcRn to explain the effects of failed release at the cell surface.
      scienceinferenceimmunology
      scienceinferenceimmunologyacademic-project
      R
      •
      MIT License
      •0•1•0•0•Updated Jun 30, 2024Jun 30, 2024

    • Barney-Peyton

      Public archive
      Code for modeling performed in Barney et al.
      bioregressionsignaling-pathways
      bioregressionsignaling-pathways
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • gc-valent

      Public archive
      Exploring what valency does to IL-2.
      immunologyacademic-projectmanuscript
      immunologyacademic-projectmanuscriptuclacytokine-receptors
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • FcRegression.jl

      Public archive
      Study Fc antibody dynamics using a multivalent binding model
      Julia
      •0•2•6•0•Updated Jun 30, 2024Jun 30, 2024

    • IL4-model

      Public archive
      Jupyter Notebook
      •0•2•0•0•Updated Jun 30, 2024Jun 30, 2024

    • tHMM

      Public
      A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
      inferencebioengineeringheterogeneity
      inferencebioengineeringheterogeneitycell-biologydrug-response
      Python
      •
      MIT License
      •1•11•2•5•Updated Apr 12, 2024Apr 12, 2024

    • CPTAC-tensor

      Public
      Exploring the CPTAC dataset using coupled tensors.
      Python
      •
      MIT License
      •0•0•0•4•Updated Oct 4, 2023Oct 4, 2023
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