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@cicwi Computational Imaging, CWI

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    26 repositories

    • AmsterdamImagingHub

      Public
      Website for the Amsterdam Imaging Hub - a collaborative initiative for scientific imaging in the greater Amsterdam area
      CSS
      •
      MIT License
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • SAGInverseProblemsNL

      Public
      Website for the Special Activity Group on Inverse Problems in the Netherlands
      CSS
      •
      MIT License
      •149•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • quarto-academic-website-template

      Public template
      A simple and easy to follow Quarto academic website template.
      CSS
      •
      MIT License
      •149•0•0•0•Updated Feb 14, 2026Feb 14, 2026

    • PyCorrectedEmissionCT

      Public
      Physically corrected projectors for X-ray induced emission CT.
      tomographyfluorescencediffraction
      tomographyfluorescencediffractionxrf-ctxrd-ct
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•9•1•1•Updated Jan 13, 2026Jan 13, 2026

    • CONcISE-pytorch-tutorial

      Public
      PyTorch tutorial for the CONcISE doctoral network school on 9 October 2025
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Oct 8, 2025Oct 8, 2025

    • flexCALC

      Public
      CT data pre- and post-processing tools, simulation of spectral data, and batch-processing of large number of datasets
      Python
      •
      Other
      •4•2•0•0•Updated Feb 5, 2025Feb 5, 2025

    • INTACT_blender

      Public
      Python
      •
      GNU General Public License v3.0
      •2•1•0•1•Updated Dec 9, 2024Dec 9, 2024

    • flexTOMO

      Public
      ASTRA-based cone beam tomography reconstructions
      Python
      •
      Other
      •5•8•1•1•Updated Sep 13, 2024Sep 13, 2024

    • flexDATA

      Public
      I/O routines for CT data
      tomographyx-rayastra-toolbox
      tomographyx-rayastra-toolbox
      Python
      •
      GNU General Public License v3.0
      •5•6•2•0•Updated Sep 13, 2024Sep 13, 2024

    • PresentationJupyterNB

      Public template
      Template for Jupyter Notebook presentation
      HTML
      •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • mac-migs-tutorial

      Public
      This is a short tutorial on applications of PyTorch in computational workflows making use of accelerated numerics and automatic differentiation. Here we look in…
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Sep 5, 2024Sep 5, 2024

    • flexbox

      Public archive
      A few modules that can be used to import data from the FlexRay machine and run some quick reconstruction scripts.
      Python
      •
      GNU General Public License v3.0
      •4•5•2•0•Updated Mar 1, 2024Mar 1, 2024

    • WalnutReconstructionCodes

      Public
      Python and MATLAB scripts for computing reconstruction from an openly available X-ray data set
      Python
      •
      MIT License
      •17•59•0•0•Updated Aug 17, 2023Aug 17, 2023

    • xCTing_training

      Public
      Python notebooks for xCTing training event "Mathematics of Tomography"
      HTML
      •1•0•0•0•Updated Mar 29, 2022Mar 29, 2022

    • IP_and_Im_Lectures

      Public
      10 Lectures on Inverse Problems and Imaging
      TeX
      •38•0•0•0•Updated Feb 21, 2022Feb 21, 2022

    • plenoptomos

      Public
      Plenoptic imaging reconstruction tools
      optimizationtomographyreconstruction
      optimizationtomographyreconstructioncomputational-photographylight-fieldplenoptic
      Python
      •
      GNU General Public License v3.0
      •2•8•0•0•Updated Dec 6, 2021Dec 6, 2021

    • PyRMLSeg

      Public
      Relaxed multi-levelset segmentation package, with tomographically consistent refinement.
      refinementtomographyimage-segmentation
      refinementtomographyimage-segmentationlevelsetdenoisingchambolle-pock
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 24, 2021Nov 24, 2021

    • applect-dataset-project

      Public
      Includes scripts supporting the AppleCT Dataset paper.
      Python
      •
      MIT License
      •1•5•0•0•Updated Mar 26, 2021Mar 26, 2021

    • RECAST3D

      Public
      Real-time visualization tool for tomographic data.
      visualizationopengltomography
      visualizationopengltomography
      C++
      •
      GNU General Public License v3.0
      •8•28•0•0•Updated May 29, 2020May 29, 2020

    • TomoPackets

      Public archive
      This repository has moved to:
      distributedtomographymessage-passing
      distributedtomographymessage-passing
      C++
      •
      GNU General Public License v3.0
      •6•2•0•2•Updated Mar 27, 2020Mar 27, 2020

    • SliceRecon

      Public archive
      This repository has moved to:
      algorithmgpu-computingtomography
      algorithmgpu-computingtomography
      C++
      •
      GNU General Public License v3.0
      •4•7•5•0•Updated Mar 27, 2020Mar 27, 2020

    • cookiecutter-cicwi

      Public
      Cookiecutter template for Python packages at CI CWI.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated May 17, 2019May 17, 2019

    • software-guides

      Public
      Guides for the development and distribution of software projects from the CI group of CWI.
      Makefile
      •3•4•0•0•Updated Nov 22, 2018Nov 22, 2018

    • Tomos

      Public
      Toolbox for tomographic reconstruction
      C++
      •
      GNU General Public License v3.0
      •6•4•0•0•Updated Oct 2, 2018Oct 2, 2018

    • PDM

      Public
      Projection distance minimization segmentation technique for tomographic images
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 28, 2017Jun 28, 2017

    • seashell_project

      Public
      Seashell project with Naturalis
      Python
      •
      MIT License
      •1•0•0•0•Updated May 1, 2017May 1, 2017
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