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    • reprostim

      Public
      Automated capture of audio-visual stimuli into BIDS datasets
      Python
      48532Updated Apr 22, 2026Apr 22, 2026
    • Containers "distribution" for reproducible neuroimaging
      Python
      Apache License 2.0
      1730396Updated Apr 21, 2026Apr 21, 2026
    • HBCD LORIS format to ReproSchema format
      Python
      MIT License
      10038Updated Apr 20, 2026Apr 20, 2026
    • A repo for developing the ReproNim inventory of training resources.
      TypeScript
      MIT License
      6651Updated Apr 16, 2026Apr 16, 2026
    • reproman

      Public
      ReproMan (AKA NICEMAN, AKA ReproNim TRD3)
      Python
      Other
      14241586Updated Apr 16, 2026Apr 16, 2026
    • Generate custom Docker and Singularity images, and minimize existing containers
      Python
      Apache License 2.0
      9835572Updated Apr 15, 2026Apr 15, 2026
    • WiP for a replacement website
      HTML
      MIT License
      90261Updated Apr 13, 2026Apr 13, 2026
    • Doing YODA style demo from https://github.com/ReproNim/containers?tab=readme-ov-file#a-typical-yoda-workflow but using fastsurfer from NeuroDesktop collection
      0000Updated Apr 10, 2026Apr 10, 2026
    • Python
      Apache License 2.0
      102155Updated Mar 16, 2026Mar 16, 2026
    • A standardized form generation and data collection schema to harmonize results by design across projects.
      Python
      Other
      2418169Updated Mar 6, 2026Mar 6, 2026
    • test freesurfer_bidsapp with babs
      Shell
      MIT License
      2020Updated Mar 5, 2026Mar 5, 2026
    • A BIDS App implementation for FreeSurfer that provides standardized surface reconstruction and morphometric analysis with NIDM output.
      Python
      MIT License
      4010Updated Mar 4, 2026Mar 4, 2026
    • A BIDS App for ANTs-based brain segmentation with NIDM outputs.
      Python
      MIT License
      2001Updated Mar 4, 2026Mar 4, 2026
    • skills

      Public
      skills for repronim tools
      MIT License
      0010Updated Mar 4, 2026Mar 4, 2026
    • The ReproSchema version of ABCD assessments.
      R
      MIT License
      0000Updated Mar 1, 2026Mar 1, 2026
    • The ReproSchema version of HBCD assessments.
      Python
      MIT License
      0000Updated Mar 1, 2026Mar 1, 2026
    • ReproTube

      Public
      Collection (git-annex/DataLad dataset) of educational videos
      Shell
      0160Updated Feb 12, 2026Feb 12, 2026
    • Navigate ABCD data with visidata
      Python
      0100Updated Jan 23, 2026Jan 23, 2026
    • Reproducible BRAIn State Extraction (ReproBRAISE)
      Python
      MIT License
      0000Updated Jan 23, 2026Jan 23, 2026
    • A script to generate a session summary from a fmriprep* (fmriprep-babies, nibabies, fmriprep, etc.) analysis
      Shell
      MIT License
      1140Updated Jan 16, 2026Jan 16, 2026
    • Benchmarking potential solutions for faster QR decoding
      Python
      0000Updated Jan 8, 2026Jan 8, 2026
    • A BIDS App that runs MRIQC quality control on neuroimaging data and converts the outputs to NIDM (Neuroimaging Data Model) format for improved interoperability …
      Python
      MIT License
      2000Updated Jan 6, 2026Jan 6, 2026
    • ANTS-based structural segmentation exporter to NIDM
      Python
      MIT License
      3000Updated Dec 2, 2025Dec 2, 2025
    • Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
      Python
      MIT License
      8192Updated Nov 30, 2025Nov 30, 2025
    • Repo for the process of adding "stuff" (ie the results of fmriprep, etc. processing) to the NIDM graph.
      Python
      MIT License
      2111Updated Nov 18, 2025Nov 18, 2025
    • A cookiecutter for reproschema protocols.
      Python
      1011Updated Sep 20, 2025Sep 20, 2025
    • FAIR neuroimaging with the Neuroimaging Data Model and PyNIDM
      Shell
      0000Updated Sep 3, 2025Sep 3, 2025
    • UI to render ReproSchema based protocols and assessments.
      Vue
      Other
      203463Updated Aug 25, 2025Aug 25, 2025
    • ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad
      Shell
      15323Updated Aug 14, 2025Aug 14, 2025
    • HTML
      GNU General Public License v3.0
      113240Updated Aug 13, 2025Aug 13, 2025
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