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Merge pull request #37 from sdhutchins/master
Add new hackathons and sitemap
2 parents 862103d + 423c45e commit f396eb5

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‎.gitignore‎

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.Ruserdata
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_site/*
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*cache
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# Jekyll specific
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.jekyll-cache/
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.jekyll-metadata
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.sass-cache/
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vendor/
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.bundle/
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Gemfile.lock
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*.gem

‎Gemfile‎

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source "https://rubygems.org"
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gem "jekyll"
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gem "webrick" # Required for Ruby >= 3.0
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# If you have any Jekyll plugins, add them here
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gem "jekyll-sitemap"

‎_config.yml‎

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# Use a Google Font
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font: "Public Sans" # Can also be 'Ubuntu', 'Public Sans', 'Source Sans Pro', or 'Oswald'
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plugins:
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- jekyll-sitemap

‎_data/upcoming_hackathons.yml‎

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link: https://www.open-bio.org/events/bosc-2025/ismb-collaborationfest-2025/
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community:
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- date: "September 8-12, 2025"
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loc: "NCBI Comparative Genomics Codeathon: Advancing human health through collaborative discovery"
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link: https://ncbiinsights.ncbi.nlm.nih.gov/event/2025cgcodeathon/
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- date: "August 14-15, 2025"
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loc: "Cell Maps for AI CodeFest"
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link: https://www.uab.edu/medicine/informatics/news-events/events/cm4ai-codefest-at-uab
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community:
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- date: "August 27-29, 2025"
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loc: "SV Hackathon 2025"
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link: https://fritzsedlazeck.github.io/blog/2025/hackathon-2025/
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community:
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- date: "September 29 - October 1, 2025"
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loc: "St. Jude KIDS25 (Knowledge in Data Science) BioHackathon"
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link: https://www.stjude.org/research/why-st-jude/biohackathon.html
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community:
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- date: "October 1-3, 2025"
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loc: "Open Targets Hackathon"
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link: https://www.opentargets.org/hackathon
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community:
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- date: "November 3-7, 2025"
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loc: "BioHackathon Europe"
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link: https://biohackathon-europe.org/
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community:

‎_includes/head.html‎

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<head>
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<meta charset="UTF-8">
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<meta content="width=device-width, initial-scale=1.0" name="viewport">
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<meta content="IE=edge,chrome=1" http-equiv="X-UA-Compatible">
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<link href="/css/bootstrap.min.css" rel="stylesheet">
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<link href="/css/font-awesome/css/font-awesome.min.css" rel="stylesheet">
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<link href="/css/custom.css" rel="stylesheet">
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<link href="https://fonts.googleapis.com/css?family=Oswald|Source+Sans+Pro|Ubuntu|Public+Sans" rel="stylesheet">
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<script src="/js/jquery.js"></script>
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<script src="/js/bootstrap.min.js"></script>
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<title>{{ site.title }}
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{% if page.title %}
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-
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{{ page.title }}
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{% endif %}
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</title>
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<style>
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body, html, div, p, a, h1, h2, h3, h4, h5, h6, footer, form {
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font-family: "{{ site.font }}", sans-serif;
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}
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<meta charset="UTF-8">
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<meta content="width=device-width, initial-scale=1.0" name="viewport">
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<meta content="IE=edge,chrome=1" http-equiv="X-UA-Compatible">
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<!-- SEO enhancements -->
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<meta name="description" content="Bringing people together to build tools or perform advanced bioinformatics analysis.">
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<meta name="robots" content="index, follow">
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<link href="/css/bootstrap.min.css" rel="stylesheet">
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<link href="/css/font-awesome/css/font-awesome.min.css" rel="stylesheet">
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<link href="/css/custom.css" rel="stylesheet">
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<link href="https://fonts.googleapis.com/css?family=Oswald|Source+Sans+Pro|Ubuntu|Public+Sans" rel="stylesheet">
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<script src="/js/jquery.js"></script>
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<script src="/js/bootstrap.min.js"></script>
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<title>{{ site.title }}
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{% if page.title %}
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-
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{{ page.title }}
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{% endif %}
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</title>
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<style>
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body, html, div, p, a, h1, h2, h3, h4, h5, h6, footer, form {
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font-family: "{{ site.font }}", sans-serif;
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}
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</style>
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</head>

‎css/custom.css‎

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.navbar-inverse .navbar-toggle:hover {
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background-color: #225077;
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border-color: #020029;
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}
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body {
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font-size: 16px;
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line-height: 1.5;
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}

‎pages/About.md‎

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---
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# About
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###### See the bottom of this page for hackathon styles employed in the Biological/Biomedical Data Science Space.
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See the bottom of this page for hackathon styles employed in the Biological/Biomedical Data Science Space.
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## Goal
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###### Bringing people together to build tools to or perform advanced bioinformatics analysis.
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Bringing people together to build tools to or perform advanced bioinformatics analysis.
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## Products
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###### Some pipelines and other scripts, software and programs generated in the events will be added to public GitHub repositories designed for that purpose.
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- Some pipelines and other scripts, software and programs generated in the events will be added to public GitHub repositories designed for that purpose.
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###### A manuscript outlining the design and usage of the software tools constructed by each team may be submitted to an appropriate journal, such as the F1000Research Hackathons channel.
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- A manuscript outlining the design and usage of the software tools constructed by each team may be submitted to an appropriate journal, such as the F1000Research Hackathons channel.
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## Notes
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###### Typically, participants will need to bring their own laptop to these programs.
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Typically, participants will need to bring their own laptop to these programs.
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## Hackathon styles employed by various institutions
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‎pages/Contact.md‎

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permalink: /Contact.html
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---
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# Contact
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# Contact Us
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##### [biohackathons@gmail.com](mailto:biohackathons@gmail.com)
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##### [ben.busby@gmail.com](mailto:ben.busby@gmail.com)
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For questions about biohackathons or to get involved, please reach out to [biohackathons@gmail.com](mailto:biohackathons@gmail.com) or [ben.busby@gmail.com](mailto:ben.busby@gmail.com).

‎pages/Help.md‎

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# Help
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##### For help with this page, please see the [about](/About.html) section of this website, or [contact Ben Busby](mailto:ben.busby@gmail.com).
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##### For help with applying to particular hackathons, please contact the organizers of the individual events, listed on their webpages.
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- For general information, see our [About](/About.html) page.
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- For website issues, contact [ben.busby@gmail.com](mailto:ben.busby@gmail.com).
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- For specific hackathon questions, contact the event organizers listed on their respective pages.

‎pages/Resources.md‎

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# Resources
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##### <a href="http://biohackathon.org/">Link to Biohackathons Website</a>
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##### <a href="https://tess.elixir-europe.org/search?utf8=%E2%9C%93&q=hackathon">Link to Hackathons on Elixir TESS</a>
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##### <a href="https://github.com/NCBI-Hackathons">Link to main Github Repo for NCBI Hackathons</a>
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##### <a href="https://f1000research.com/search?q=hackathons">Link to F1000 Research Hackathons Page</a>
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- [Biohackathons Website](http://biohackathon.org/)
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- [Hackathons on ELIXIR TESS](https://tess.elixir-europe.org/search?utf8=%E2%9C%93&q=hackathon)
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- [NCBI Hackathons GitHub](https://github.com/NCBI-Hackathons)
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- [F1000 Research Hackathons](https://f1000research.com/search?q=hackathons)

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