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enhance(flakes): switch from toml to flake.nix #1145

@Malix-Labs

Description

@Malix-Labs

Would :

  1. Deprecate the use of a non-standard parser (since [RFC 0193] TOML Flakes rfcs#193 has not been accepted)
  2. Remove the need for a custom parser which duplicates efforts and raise issues such as feat(flakes): missing flake reference attributes #994
  3. Make fix(flakes): pinning locking #1144 trivial by using its built-in lockfile mechanism

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